Fiji

Fiji is a popular free open-source image processing package based on ImageJ, https://imagej.net/Fiji. We demonstrate how to use Fiji User Interface and OMERO and we also demonstrate how to analyze data in OMERO using Fiji scripting facility.

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Install the plugins

Manual Analysis

Automated Analysis

Fiji and Zarr

Contribute

Changes to the documentation or the materials should be made directly in the omero-guide-fiji repository.